1 Introduction:
Uranium is a toxic radionuclide with a special configuration similar to thorium in which the 5f orbital energy level is very close to the 6d[1] . The 5f orbital could also participate in bonding, and thus uranium and thorium can form host multiple ligands in similar configurations[2-4]. During the development of computational chemistry[5,6], density functional theory (DFT) [7-10] was continuously introduced into the polymerization of molecular imprinting[11-15]. Computer simulations can partially replace conventional experiments and greatly reduce the number of synthesis conditions and the cost of reagents and labor. Some important uranium complexes have been reported using density functional theory (DFT) calculations with the B3LYP method of 6-311G ** basis set[16]. These have offered valuable synthetic guides.
N, N'-bis-allyl salicylaldehyde ally-o-phenylene-diamine (BSAPDA) is an important Schiff base with four coordination atoms. A thorium complex of BSAPDA, Th(BSAPDA)2, was synthesized in the laboratory[17]. While uranium has a similar coordination property as thorium, there has been no study on U(BSAPDA)2. In this paper, we performed a theoretical study on U(BSAPDA)2 using DFT calculations with the B3LYP method on a 6-311G** basis set. Some important structural information and properties of U(BSAPDA)2 were obtained including the molecular configuration parameters, spectral properties, thermodynamic properties, atomic charge, molecular orbitals and binding energy.
2 Methods
Geometry optimization used Gaussian 09 software[18]. Density functional theory (DFT)[19] calculations for the U(BSAPDA)2 complexes are shown in Figure 1 and Figure 2 via the B3LYP[20] gradient-corrected hybrid function to solve the Kohn–Sham equations with a 105 convergence criterion for the density change. Relativistic effects were considered through the use of RECP basis sets [21, 22] on the U atom. For the other atoms (C, H, O, N), the 6-311G** basis sets[23] were adopted. The final geometries were confirmed as minima of the potential energy surface (PES) by calculating the hessians. The harmonic vibrational frequencies and intensities were calculated at the same level of theory using the second derivatives of the energy as a function of atomic coordinates. The calculated intensities generated the theoretical spectra. The main structural parameters and infrared characterization from the theoretical simulation for PDS-U of U(BSAPDA)2 complex were compared and analyzed with the corresponding SFS-U.
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3 Results and discussion
3.1 The PDS-U and the SFS-U Structures
The molecular simulation was performed using DFT calculations[19] at the B3LYP[20]/6-311G** level for U(BSAPDA)2. The results showed that uranium (IV) could be coordinated by two BSAPDA molecules. These formed a complex of U(BSAPDA)2 with two different structures and a ratio of 1:2. The optimized configurations were shown in Figure 1 (PDS-U) and Figure 2 (SFS-U), respectively. In Figure 1, a and b show the two different perspectives, i.e., the front view and the top view, respectively. The two BSAPDA molecules lay upwards and downwards at the uranium in similar "∨" and "∧" shapes, respectively. The two BSAPDAs’ middle benzene rings (the benzene rings of o-phenylene-diamine) adopted a parallel dislocation structure (PDS) with an angle of 56.64o, and uranium(IV) occupied the central position of the molecular structure. The numbers of atoms are listed in Figure 1 c and d, c and d as the top view and bottom view of the PDS-U, respectively. The other U(BSAPDA)2 structures were shown in Figure 2. Uranium(IV) coordinated with four nitrogen atoms and four oxygen atoms of the two BSAPDA molecules give a staggered finger "+" structure (SFS). In the SFS, the benzene rings of o-phenylene-diamine of BSAPDAs were perpendicular to each other, and the transverse BSAPDA molecule was similar to "∨" shape. The uranium ion is located at the center of the "+" shape. The numbers of atoms are listed in Figure 2 g and h. This figure shows the top view and right side view (e), g shows the number of transverse BSAPDA ligands, and h is the number of the vertical BSAPDA for the SFS-U.
Blue, red, green and yellow balls (except the center U atom) stand for N, O, C and H atoms, respectively. The main structural parameters from the molecular simulation are shown in Table 1 and Table 2.
Bond length(Å) | PDS-U | PDS-Th | SFS-U | Bond length | PDS-U | PDS-Th | SFS-U |
---|---|---|---|---|---|---|---|
U-O(35) | 2.2303 | 2.286 | 2.2278 | U-N(11) | 2.6881 | 2.651 | 2.6089 |
U-O(36) | 2.2243 | 2.265 | 2.2142 | U-N(12) | 2.6604 | 2.665 | 2.6765 |
U-O(72) | 2.2303 | 2.266 | 2.2279 | U-N(48) | 2.6884 | 2.671 | 2.6213 |
U-O(73) | 2.2243 | 2.259 | 2.2234 | U-N(49) | 2.6606 | 2.665 | 2.6302 |
Bond angle(°) | PDS-U | PDS-Th | SFS-U | Bond angle | PDS-U | PDS-Th | SFS-U |
---|---|---|---|---|---|---|---|
O(35)-U-O(36) | 87.4 | 88.02 | 155.39 | O(72)-U-N(12) | 74.48 | 74.27 | 80.67 |
O(35)-U-O(72) | 171.2 | 172.09 | 95.89 | O(73)-U-N(12) | 151.68 | 154.07 | 76.53 |
O(35)-U-O(73) | 86.31 | 86.03 | 96.69 | O(35)-U-N(11) | 67.77 | 67.94 | 70.69 |
O(36)-U-O(72) | 86.32 | 85.26 | 87.89 | O(36)-U-N(11) | 106.92 | 110.73 | 133.77 |
O(36)-U-O(73) | 88.86 | 90.62 | 88.78 | O(72)-U-N(11) | 120.08 | 118.48 | 76.27 |
O(72)-U-O(73) | 87.4 | 89.87 | 156.71 | O(73)-U-N(11) | 148.4 | 144.87 | 86.53 |
N(11)-U-N(12) | 58.75 | 60.30 | 64.16 | O(35)-U-N(48) | 120.07 | 120.02 | 80.88 |
N(11)-U-N(48) | 73.71 | 70.60 | 134.84 | O(36)-U-N(48) | 148.4 | 147.62 | 77.74 |
N(11)-U-N(49) | 86.44 | 81.55 | 139.51 | O(72)-U-N(48) | 67.77 | 67.64 | 69.37 |
N(12)-U-N(48) | 86.45 | 87.03 | 136.41 | O(73)-U-N(48) | 107.92 | 106.07 | 132.11 |
N(12)-U-N(49) | 137.44 | 136.67 | 134.3 | O(35)-U-N(49) | 74.47 | 72.92 | 80.04 |
N(48)-U-N(49) | 58.75 | 59.66 | 63.01 | O(36)-U-N(49) | 151.69 | 151.90 | 77.74 |
O(35)-U-N(12) | 108.87 | 107.02 | 134.59 | O(72)-U-N(49) | 108.87 | 111.74 | 132.28 |
O(36)-U-N(12) | 68.77 | 68.11 | 70.02 | O(73)-U-N(49) | 68.78 | 68.10 | 69.43 |
The calculated bond lengths and bond angles for the PDS-U and the SFS-U are listed in Tables 1 and 2. It was clear that the PDS-U was totally different from the SFS-U, in which the two BASPDA ligands combined with a U atom such that the middle benzene ring had a parallel dislocation angle of 56.64o. Although the main bond lengths of the PDS-U were close to the SFS-U, the main bond angles were totally different from each other. This implied that there were two different structures for U(BSAPDA)2.
There were no experimental data available for U(BSAPDA)2. Thus, we compared the calculated results with that of Th(BSAPDA)2 as recently synthesized by He et al. [17]. Note that only one structure of PDS-Th was obtained in their experiment (Tables 1 and 2). The comparison showed that the calculated parameters for PDS-U are very similar to that of PDS-Th, confirming the accuracy of our calculations.
3.2 Atomic charge distribution
The atomic charges obtained from the simulation for the PDS-U and the SFS-U are listed in Table 3. The numbers of atoms are shown in Figure 1 c and d and Figure 2 g and h. The positive electric charge values of U in the PDS-U and the SFS-U are +2.4009 and +2.3934, respectively. This indicates that the donor atoms in the PDS-U and the SFS-U could coordinate to the uranium ion with different binding modes.
N | Charge | N | Charge | N | Charge | |||
---|---|---|---|---|---|---|---|---|
PDS-U | SFS-U | PDS-U | SFS-U | PDS-U | SFS-U | |||
C-1 | -0.1004 | -0.0843 | O-36 | -0.6110 | -0.6344 | H-71 | 0.0937 | 0.0935 |
C-2 | -0.0829 | -0.1143 | U-37 | 2.4009 | 2.3934 | O-72 | -0.6248 | -0.6291 |
C-3 | 0.1385 | 0.1906 | C-38 | -0.1004 | -0.0751 | O-73 | -0.6110 | -0.6280 |
C-4 | 0.1428 | 0.1801 | C-39 | -0.0829 | -0.1161 | C-74 | -0.1200 | -0.1215 |
C-5 | -0.0884 | -0.1035 | C-40 | 0.1384 | 0.1660 | H-75 | 0.1291 | 0.1820 |
C-6 | -0.0896 | -0.0843 | C-41 | 0.1428 | 0.1691 | H-76 | 0.1660 | 0.1236 |
H-7 | 0.0943 | 0.0959 | C-42 | -0.0884 | -0.0953 | C-77 | -0.1426 | -0.1253 |
H-8 | 0.1070 | 0.1099 | C-43 | -0.0896 | -0.0841 | H-78 | 0.1722 | 0.1507 |
H-9 | 0.1028 | 0.1018 | H-44 | 0.0943 | 0.0961 | H-79 | 0.1272 | 0.1260 |
H-10 | 0.0964 | 0.0953 | H-45 | 0.1070 | 0.1071 | C-80 | -0.1200 | -0.1280 |
N-11 | -0.5111 | -0.5733 | H-46 | 0.1028 | 0.1072 | H-81 | 0.1291 | 0.1645 |
N-12 | -0.5387 | -0.5567 | H-47 | 0.0964 | 0.0961 | H-82 | 0.1661 | 0.1259 |
C-13 | 0.1824 | 0.1822 | N-48 | -0.5110 | -0.5566 | C-83 | -0.1425 | -0.1266 |
H-14 | 0.0930 | 0.0977 | N-49 | -0.5386 | -0.5568 | H-84 | 0.1722 | 0.1237 |
C-15 | 0.1892 | 0.1767 | C-50 | 0.1824 | 0.1857 | H-85 | 0.1272 | 0.1631 |
H-16 | 0.0956 | 0.0908 | H-51 | 0.0930 | 0.0945 | C-86 | -0.1628 | -0.1657 |
C-17 | -0.1776 | -0.1748 | C-52 | 0.1893 | 0.1770 | H-87 | 0.0961 | 0.0998 |
C-18 | 0.2801 | 0.2873 | H-53 | 0.0956 | 0.0947 | C-88 | -0.1928 | -0.1931 |
C-19 | -0.0380 | -0.0445 | C-54 | -0.1775 | -0.1778 | H-89 | 0.0979 | 0.0972 |
C-20 | -0.1937 | -0.1851 | C-55 | 0.2801 | 0.2934 | H-90 | 0.1021 | 0.1024 |
C-21 | -0.1119 | -0.1093 | C-56 | -0.0380 | -0.0435 | C-91 | -0.1625 | -0.1665 |
H-22 | 0.0809 | 0.0822 | C-57 | -0.1937 | -0.1856 | H-92 | 0.1010 | 0.0981 |
C-23 | -0.0186 | -0.0166 | C-58 | -0.1119 | -0.1095 | C-93 | -0.1927 | -0.1923 |
H-24 | 0.0870 | 0.0868 | H-59 | 0.0809 | 0.0825 | H-94 | 0.1031 | 0.0981 |
H-25 | 0.0930 | 0.0922 | C-60 | -0.0186 | -0.0147 | H-95 | 0.0969 | 0.1022 |
C-26 | -0.1795 | -0.1809 | H-61 | 0.0870 | 0.0869 | C-96 | -0.1625 | -0.1652 |
C-27 | 0.2775 | 0.2972 | H-62 | 0.0930 | 0.0932 | H-97 | 0.1010 | 0.1001 |
C-28 | -0.0435 | -0.0411 | C-63 | -0.1795 | -0.1835 | C-98 | -0.1927 | -0.1932 |
C-29 | -0.1764 | -0.1875 | C-64 | 0.2775 | 0.2929 | H-99 | 0.0969 | 0.0974 |
C-30 | -0.1078 | -0.1097 | C-65 | -0.0435 | -0.0418 | H-100 | 0.1031 | 0.1032 |
H-31 | 0.0811 | 0.0813 | C-66 | -0.1763 | -0.1864 | C-101 | -0.1628 | -0.1672 |
C-32 | -0.0091 | -0.0118 | C-67 | -0.1078 | -0.1092 | H-102 | 0.0961 | 0.0976 |
H-33 | 0.0871 | 0.0870 | H-68 | 0.0811 | 0.0829 | C-103 | -0.1928 | -0.1952 |
H-34 | 0.0937 | 0.0931 | C-69 | -0.0091 | -0.0117 | H-104 | 0.0979 | 0.0971 |
O-35 | -0.6248 | -0.6242 | H-70 | 0.0871 | 0.0861 | H-105 | 0.1021 | 0.1015 |
3.3 Infrared Spectroscopy
The infrared spectra of the PDS-U and the SFS-U obtained by molecular simulations at the same level are shown in Figure 3. There was no imaginary frequency for the calculated IR vibrations of all geometry structures. This indicated that these two structures are quite stable. The C=N stretching vibration absorption peak of the PDS-U appeared at 1638.75 cm-1, and the benzene ring stretching vibration absorption peak was at 1574.06 cm-1. These observations are similar to that for the PDS-Th complex in the experiment, i.e., 1612 cm-1 and 1574 cm-1, respectively[17]. For the SFS-U complex, the C=N stretching vibration absorption peak appeared at 1640.98 cm-1, and the benzene ring stretching vibration absorption peak was at 1574.30 cm-1. These were very close to the corresponding peak for the PDS-U complex. However, the absorption intensities were significantly different, and the benzene ring stretching vibration absorption of the PDS-U was stronger than that of the SFS-U.
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3.4. Binding energy
The binding energies of the PDS-U and SFS-U complexes were calculated. The binding energy was calculated via formula (1). The term ⊿ABW(R) represents the binding energy, and
The binding energies of the PDS-U and SFS-U were -4695.95 KJ/mol and -4760.61 KJ/mol. The binding energy of the SFS-U was -64.66 KJ/mol smaller than that of the PDS-U. This means that the N, N'-bis-allyl salicylaldehyde ally-o-phenylene-diamine coordinated more strongly to uranium (IV) in the SFS-U complex than in the PDS-U complex.
3.5 The thermal properties of complexes
To further investigate the stability of the two complexes, we calculated the changes of Gibbs free energy (ΔG) and enthalpy (ΔH) for the complexation reactions (U4++ 2BSAPDA→U(BSAPDA)2+2H+) under the same model. Table 4 shows the calculated thermal properties for the PDS-U and the SFS-U of U(BSAPDA)2 at 298.15 K and 1 atm. The results showed that SFS-U has a ΔG value that is ~64 KJ/mol lower than that of PDS-U; the ΔH value is ~63 KJ/mol lower than that of PDS-U. These results indicated that SFS-U is more stable than PDS-U and the BSAPDA ligand coordinates more tightly to U(IV) in the SFS-U complex versus PDS-U complex.
Structure | PDS-U | SFS-U |
---|---|---|
ΔG | -4819.58 | -4883.80 |
ΔH | -4869.49 | -4932.60 |
3.6 Molecular orbitals and energies
Figure 4 presents the Kohn-Sham representations of HOMO (the highest occupied molecular orbital) and LUMO (the lowest unoccupied molecular orbital) for the PDS-U and the SFS-U of U(BSAPDA)2. The red and green portions represent the positive and negative phase of the molecular orbitals, respectively.
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The highest occupied molecular orbital energy (EHOMO) of the PDS-U is shown on the left in Figure 4 and was -3.7889 eV. The lowest unoccupied molecular orbital energy (ELUMO) of the PDS-U is shown on the right and was -2.2903 eV. The energy gap between LUMO and HOMO was 1.4985 eV, namely, ΔE = 1.4985 eV. This indicated that to get the excited PDS-U, an energy of 1.4985 eV would be absorbed by the ground state molecule. For SFS-U, EHOMO was -4.1296eV, the ELUMO was -2.1075 eV; the energy gap (ΔE) was 2.0221 eV—this indicated that 2.0221 eV would be absorbed when the ground state SFS-U was excited. Thus, the ground state of SFS-U is harder to excite than the ground state of PDS-U. The SFS-U complex is thus more stable than the PDS-U complex (Table 5).
Structure | EHOMO | ELUMO | ΔEH-L |
---|---|---|---|
PDS-U | -3.7889 | -2.2904 | 1.4985 |
SFS-U | -4.1296 | -2.1075 | 2.0221 |
The HOMO energies were negative in the two U(BSAPDA)2 complexes. This implied that the extent of electron delocalization increased after the complex formation. The energies of the occupied orbitals decreased, and stability was enhanced in the system.
3.7 Wiberg bond order indices
Generally, larger bond orders have larger bond energy and more stability[24]. Table 6 shows that the U-O WBIs ranged from 0.7179 to 0.7581 for the complexes on the same basis of NBO (natural bond orbital). The U-N WBIs changed from 0.3508 to 0.3948. The U-O Wiberg bond indices (WBIs) of the complexes were higher than the U-N Wiberg bond indices. This showed that the U-O bonds have more covalent characters than the U-N bonds. For the PDS-U complex, the WBIs of both the U-O bonds and U-N bonds were slightly less than those of the SFS-U complex. This indicated that the strengths of the U-O and U-N bonds in SFS-U complex were slightly stronger than that in the PDS-U complex.
WBIs | PDS-U | SFS-U | WBIs | PDS-U | SFS-U |
---|---|---|---|---|---|
U-O(35) | 0.7310 | 0.7415 | U-N(11) | 0.3508 | 0.3948 |
U-O(36) | 0.7179 | 0.7581 | U-N(12) | 0.3620 | 0.3700 |
U-O(72) | 0.7359 | 0.7478 | U-N(48) | 0.3659 | 0.3819 |
U-O(73) | 0.7238 | 0.7534 | U-N(49) | 0.3678 | 0.3813 |
4 Conclusion
A complex of uranium(IV)-Schiff base, U(BSAPDA)2, was theoretically studied using density functional theory (DFT) calculations at the B3LYP/6-311G**level including the molecular geometry, atomic charge, spectral properties, binding energy, thermodynamic properties and molecular orbitals. The complex U(BSAPDA)2 could form two different molecular structures with at a ratio of 1:2. One was the PDS-U structure in which the two middle benzene rings of BSAPDA (the benzene rings of o-phenylene-diamine) adopted a parallel dislocation with an angle of 56.64o. The other was the SFS-U structure in which the two BSAPDA molecules constructed a similar staggered finger "+" shape. The results further indicated that SFS-U is more stable than PDS-U. The BSAPDA ligand coordinated more tightly to the U(IV) in the SFS-U complex versus that in the PDS-U complex. This study provides theoretical guidelines for the synthesis of other uranium-complexes in experimental applications.
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